Variant report

Variant	rs13336393
Chromosome Location	chr16:79926869-79926870
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11150228	0.89[AMR][1000 genomes]
rs11646999	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13331730	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73574098	1.00[ASN][1000 genomes]
rs73576062	0.89[AMR][1000 genomes]
rs9788962	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9922706	0.84[AMR][1000 genomes]
rs9935635	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv573290	chr16:79853267-79939504	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv573291	chr16:79881386-79931595	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv906994	chr16:79883850-79928186	Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79908800-79931400	Weak transcription	Right Atrium	heart
2	chr16:79925800-79929200	Weak transcription	Fetal Intestine Large	intestine
3	chr16:79926400-79927200	Enhancers	Liver	Liver
4	chr16:79926600-79927000	Weak transcription	HepG2	liver
5	chr16:79926800-79927400	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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