Variant report

Variant	rs13337657
Chromosome Location	chr16:82090693-82090694
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs3751862	1.00[CEU][hapmap]
rs8050864	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907012	chr16:81986896-82115148	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1058368	chr16:82029516-82152788	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
4	nsv532599	chr16:82074439-82926863	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82076600-82094800	Enhancers	Fetal Intestine Large	intestine
2	chr16:82084000-82092400	Weak transcription	Colonic Mucosa	Colon
3	chr16:82085200-82093000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr16:82086200-82103800	Weak transcription	Gastric	stomach
5	chr16:82088800-82090800	Enhancers	HMEC	breast
6	chr16:82089000-82090800	Enhancers	Fetal Intestine Small	intestine
7	chr16:82089000-82091400	Weak transcription	Placenta	Placenta
8	chr16:82089400-82091000	Weak transcription	Duodenum Mucosa	Duodenum
9	chr16:82089400-82093800	Weak transcription	Lung	lung
10	chr16:82089400-82105800	Weak transcription	Rectal Smooth Muscle	rectum
11	chr16:82089600-82091800	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr16:82089600-82092800	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr16:82089600-82103800	Weak transcription	Pancreas	Pancrea
14	chr16:82089800-82092000	Weak transcription	Small Intestine	intestine
15	chr16:82089800-82092800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr16:82090000-82090800	Flanking Active TSS	HepG2	liver
17	chr16:82090000-82093400	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr16:82090200-82092000	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr16:82090200-82093400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr16:82090400-82092200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr16:82090600-82091000	Enhancers	Liver	Liver
22	chr16:82090600-82092200	Weak transcription	Stomach Mucosa	stomach
23	chr16:82090600-82095400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr16:82090600-82095800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr16:82090600-82095800	Weak transcription	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links