Variant report

Variant	rs13338085
Chromosome Location	chr16:12655402-12655403
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12927563	1.00[YRI][hapmap]
rs2077294	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043096	chr16:12013915-12840769	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv571463	chr16:12367791-12783535	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1051242	chr16:12482972-12897243	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv542749	chr16:12482972-12897243	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv1035581	chr16:12516946-12863700	ZNF genes & repeats Weak transcription Enhancers Genic enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv1051607	chr16:12522130-13347676	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
7	nsv542750	chr16:12522130-13347676	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
8	esv1842867	chr16:12632286-12678721	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	esv2751546	chr16:12635498-12674704	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv1050925	chr16:12648058-12670588	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv1044772	chr16:12648266-12668751	ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv528018	chr16:12653650-12657321	Weak transcription Enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
13	nsv1049011	chr16:12655176-12672143	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:12613000-12670800	Weak transcription	Pancreas	Pancrea
2	chr16:12632800-12663800	Weak transcription	Aorta	Aorta
3	chr16:12639400-12659000	Weak transcription	Lung	lung
4	chr16:12641200-12667000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr16:12642000-12662200	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr16:12643000-12659200	Weak transcription	Placenta	Placenta
7	chr16:12645200-12661600	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr16:12646000-12659000	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr16:12646000-12661000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr16:12646200-12659800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr16:12646200-12660000	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr16:12646400-12659400	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr16:12646400-12660800	Weak transcription	Thymus	Thymus
14	chr16:12647400-12658800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr16:12647400-12662200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr16:12647400-12665200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr16:12647600-12661600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr16:12648000-12662200	Weak transcription	Fetal Stomach	stomach
19	chr16:12648400-12668800	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr16:12648800-12659200	Weak transcription	Esophagus	oesophagus
21	chr16:12649000-12658600	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr16:12649800-12662200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr16:12652200-12660200	Strong transcription	Primary B cells from cord blood	blood
24	chr16:12652200-12669200	Weak transcription	Brain Cingulate Gyrus	brain
25	chr16:12652400-12658200	Strong transcription	Primary B cells from peripheral blood	blood
26	chr16:12652400-12666400	Weak transcription	Brain Anterior Caudate	brain
27	chr16:12652600-12665800	Weak transcription	Brain Angular Gyrus	brain
28	chr16:12652600-12672200	Weak transcription	Right Ventricle	heart
29	chr16:12652800-12663400	Weak transcription	Brain Substantia Nigra	brain
30	chr16:12653200-12659200	Weak transcription	Adipose Nuclei	Adipose
31	chr16:12653200-12662200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr16:12653200-12667600	Weak transcription	Brain Hippocampus Middle	brain
33	chr16:12653200-12669200	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr16:12653400-12659800	Weak transcription	Ovary	ovary
35	chr16:12653600-12659000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr16:12653600-12662400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr16:12653600-12662600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr16:12653600-12663200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr16:12653800-12662600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr16:12653800-12665800	Weak transcription	NHDF-Ad	bronchial
41	chr16:12654400-12655600	Strong transcription	Stomach Smooth Muscle	stomach
42	chr16:12654800-12659600	Strong transcription	Primary T cells from cord blood	blood
43	chr16:12655000-12656000	Strong transcription	Spleen	Spleen
44	chr16:12655400-12655800	Weak transcription	GM12878-XiMat	blood
45	chr16:12655400-12656000	Strong transcription	Gastric	stomach

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