Variant report

Variant	rs13338411
Chromosome Location	chr16:11915414-11915415
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs16958700	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs373496	0.83[EUR][1000 genomes]
rs3885011	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4780403	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4780406	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4781160	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs57934416	0.84[EUR][1000 genomes]
rs58472329	0.84[EUR][1000 genomes]
rs7193780	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73509738	0.84[EUR][1000 genomes]
rs73509774	0.84[EUR][1000 genomes]
rs74010441	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482288	chr16:11776491-11946429	Flanking Active TSS Strong transcription Genic enhancers Weak transcription Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
2	nsv1043909	chr16:11839910-12007435	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv1042660	chr16:11846873-12110435	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:11912200-11917800	Genic enhancers	Placenta	Placenta
2	chr16:11914200-11918000	Weak transcription	Stomach Mucosa	stomach
3	chr16:11914200-11918200	Weak transcription	K562	blood
4	chr16:11914200-11918200	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr16:11914400-11916000	Weak transcription	Primary monocytes fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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