Variant report

Variant	rs13339970
Chromosome Location	chr21:16771318-16771319
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11910100	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11911211	0.90[AMR][1000 genomes]
rs13339973	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16982992	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17464781	0.90[AMR][1000 genomes]
rs17464809	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8132828	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063385	chr21:16521617-16926212	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1064280	chr21:16664312-17049272	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv834049	chr21:16717421-16905300	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16759800-16772000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr21:16769800-16775000	Strong transcription	Primary hematopoietic stem cells	blood
3	chr21:16769800-16775400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr21:16770400-16780400	Weak transcription	Psoas Muscle	Psoas
5	chr21:16770800-16771400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr21:16770800-16771600	Enhancers	Adipose Nuclei	Adipose
7	chr21:16771200-16773200	Weak transcription	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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