Variant report

Variant	rs13344485
Chromosome Location	chr19:41539273-41539274
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10404925	1.00[AMR][1000 genomes]
rs10405792	1.00[AMR][1000 genomes]
rs10414090	1.00[AMR][1000 genomes]
rs10416437	1.00[AMR][1000 genomes]
rs10419125	1.00[AMR][1000 genomes]
rs10420158	1.00[AMR][1000 genomes]
rs10422086	1.00[AMR][1000 genomes]
rs10425970	1.00[AMR][1000 genomes]
rs10426235	1.00[AMR][1000 genomes]
rs11083594	1.00[AMR][1000 genomes]
rs13345967	1.00[AMR][1000 genomes]
rs28483617	1.00[AMR][1000 genomes]
rs28576095	1.00[AMR][1000 genomes]
rs28616828	1.00[AMR][1000 genomes]
rs28723610	1.00[AMR][1000 genomes]
rs34749331	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758500	chr19:41291627-41546068	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	esv2758762	chr19:41291627-41546068	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv1066637	chr19:41309211-41597896	Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	esv2755485	chr19:41431935-41558271	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1058051	chr19:41497274-41558271	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1065684	chr19:41516389-41644542	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv963051	chr19:41538195-41558450	ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:41535400-41539400	Enhancers	Placenta	Placenta
2	chr19:41538200-41539400	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr19:41538600-41539800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr19:41538800-41539800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr19:41539000-41539400	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr19:41539000-41539400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
7	chr19:41539000-41539400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr19:41539000-41539400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr19:41539200-41539400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr19:41539200-41539600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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