Variant report

Variant	rs1335280
Chromosome Location	chr13:80407093-80407094
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11841161	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2152227	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4885678	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55782753	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60183121	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6563141	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6563144	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7320994	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7327438	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7331323	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7332904	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7337191	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7987352	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7994812	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9545243	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900588	chr13:80216846-80421340	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv900590	chr13:80342186-80421340	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1043768	chr13:80398379-80447095	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80403600-80408400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr13:80405800-80411800	Weak transcription	NHLF	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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