Variant report

Variant	rs1335359
Chromosome Location	chr9:117974038-117974039
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10982617	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4428738	1.00[ASN][1000 genomes]
rs72762345	1.00[ASN][1000 genomes]
rs72762353	1.00[ASN][1000 genomes]
rs72762359	1.00[ASN][1000 genomes]
rs72762360	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615250	chr9:117768021-118012841	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv916912	chr9:117770039-118014140	Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv831697	chr9:117860416-118023927	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv893769	chr9:117936903-117985886	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117960800-117975800	Weak transcription	Fetal Kidney	kidney
2	chr9:117963000-117977200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr9:117967800-117979400	Weak transcription	Aorta	Aorta
4	chr9:117969000-117975400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr9:117969000-117976800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr9:117969200-117975000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr9:117969400-117974600	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr9:117969400-117976000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr9:117972400-117976400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr9:117972600-117975600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr9:117972600-117975600	Weak transcription	NHEK	skin
12	chr9:117973000-117975600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr9:117973000-117976600	Enhancers	NHDF-Ad	bronchial
14	chr9:117973200-117975200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr9:117973600-117974800	Enhancers	NHLF	lung
16	chr9:117973600-117975200	Enhancers	Muscle Satellite Cultured Cells	--
17	chr9:117973600-117975400	Enhancers	HSMMtube	muscle
18	chr9:117973600-117975800	Enhancers	Primary B cells from peripheral blood	blood
19	chr9:117973600-117976600	Enhancers	Fetal Lung	lung
20	chr9:117973600-117977000	Enhancers	Fetal Stomach	stomach
21	chr9:117973800-117974200	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr9:117973800-117974200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr9:117973800-117974200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr9:117973800-117974200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr9:117973800-117974200	Active TSS	Duodenum Mucosa	Duodenum
26	chr9:117973800-117974200	Enhancers	Placenta	Placenta
27	chr9:117973800-117974200	Enhancers	Gastric	stomach
28	chr9:117973800-117974200	Enhancers	Stomach Mucosa	stomach
29	chr9:117973800-117974200	Flanking Active TSS	GM12878-XiMat	blood
30	chr9:117973800-117974200	Flanking Active TSS	HSMM	muscle
31	chr9:117973800-117974200	Flanking Active TSS	Osteobl	bone
32	chr9:117973800-117974400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr9:117973800-117974400	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr9:117973800-117974800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr9:117973800-117974800	Enhancers	Fetal Muscle Leg	muscle
36	chr9:117973800-117975000	Enhancers	Duodenum Smooth Muscle	Duodenum
37	chr9:117973800-117976600	Enhancers	Adipose Nuclei	Adipose
38	chr9:117973800-117976800	Enhancers	NH-A	brain
39	chr9:117973800-117977000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr9:117973800-117977000	Enhancers	Colon Smooth Muscle	Colon
41	chr9:117973800-117977000	Enhancers	Rectal Smooth Muscle	rectum
42	chr9:117973800-117977800	Enhancers	Cortex derived primary cultured neurospheres	brain
43	chr9:117974000-117974200	Enhancers	Liver	Liver
44	chr9:117974000-117974200	Active TSS	Skeletal Muscle Female	skeletal muscle
45	chr9:117974000-117974400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr9:117974000-117974400	Enhancers	HMEC	breast
47	chr9:117974000-117974800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr9:117974000-117974800	Weak transcription	Brain Hippocampus Middle	brain
49	chr9:117974000-117975400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr9:117974000-117975800	Weak transcription	Stomach Smooth Muscle	stomach

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