Variant report

Variant	rs1335397
Chromosome Location	chr13:88383878-88383879
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1335398	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2027158	0.81[ASN][1000 genomes]
rs7333224	0.80[ASN][1000 genomes]
rs73578496	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9557556	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv562631	chr13:88379124-88470185	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3371016	chr13:88381651-88384649	Enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
3	esv3339305	chr13:88382251-88384049	Bivalent Enhancer Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:88383400-88384000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
2	chr13:88383600-88384200	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
3	chr13:88383600-88384200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
4	chr13:88383600-88384200	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr13:88383600-88384400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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