Variant report

Variant	rs13354987
Chromosome Location	chr5:52663228-52663229
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs13359550	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13360046	0.88[ASN][1000 genomes]
rs16881344	0.93[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949005	chr5:52188028-52808229	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2752745	chr5:52422063-53343529	Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv830297	chr5:52492494-52707758	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv508356	chr5:52646168-52703120	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:52660200-52664200	Weak transcription	NH-A	brain
2	chr5:52660600-52663800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr5:52660800-52663400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:52660800-52663800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr5:52660800-52663800	Weak transcription	Hela-S3	cervix
6	chr5:52661800-52663800	Weak transcription	NHLF	lung
7	chr5:52662000-52663800	Weak transcription	NHEK	skin
8	chr5:52662000-52664000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr5:52662200-52663600	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr5:52662600-52664200	Weak transcription	HUVEC	blood vessel
11	chr5:52662600-52664400	Weak transcription	Osteobl	bone
12	chr5:52662600-52674200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr5:52662800-52663800	Weak transcription	HMEC	breast
14	chr5:52663000-52663400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr5:52663200-52663600	Weak transcription	A549	lung
16	chr5:52663200-52666000	Enhancers	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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