Variant report

Variant	rs13355146
Chromosome Location	chr5:92023661-92023662
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:92003404..92005151-chr5:92021003..92023923,2	MCF-7	breast:
2	chr5:92023157..92023758-chr5:92173968..92174654,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10075131	0.83[ASN][1000 genomes]
rs12657622	0.81[ASN][1000 genomes]
rs12659046	0.87[ASN][1000 genomes]
rs13158057	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13163415	0.89[ASN][1000 genomes]
rs13175613	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13186889	0.89[ASN][1000 genomes]
rs1393217	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1393218	0.84[ASN][1000 genomes]
rs17082487	0.89[ASN][1000 genomes]
rs194495	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs2431368	0.84[ASN][1000 genomes]
rs258951	0.91[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs7730365	0.83[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015770	chr5:91911877-92498264	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv882379	chr5:91938705-92064532	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1024978	chr5:91991039-92033685	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
4	nsv462249	chr5:92008283-92054149	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
5	nsv598939	chr5:92008283-92054149	Weak transcription Flanking Active TSS Enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
6	nsv882380	chr5:92012438-92064532	Flanking Active TSS Enhancers Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92017600-92024000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:92023000-92023800	Enhancers	Muscle Satellite Cultured Cells	--
3	chr5:92023000-92024600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:92023200-92023800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr5:92023200-92023800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr5:92023400-92023800	Enhancers	Liver	Liver
7	chr5:92023400-92024200	Active TSS	Brain Substantia Nigra	brain
8	chr5:92023400-92024400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr5:92023600-92023800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:92023600-92023800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr5:92023600-92023800	Flanking Active TSS	Fetal Kidney	kidney
12	chr5:92023600-92023800	Flanking Active TSS	NHLF	lung
13	chr5:92023600-92024000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr5:92023600-92024000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr5:92023600-92024000	Active TSS	Duodenum Smooth Muscle	Duodenum
16	chr5:92023600-92024000	Active TSS	Fetal Lung	lung
17	chr5:92023600-92024000	Active TSS	Stomach Smooth Muscle	stomach
18	chr5:92023600-92024000	Active TSS	NHDF-Ad	bronchial
19	chr5:92023600-92024200	Active TSS	Brain Angular Gyrus	brain
20	chr5:92023600-92024200	Active TSS	Brain Cingulate Gyrus	brain
21	chr5:92023600-92024200	Active TSS	Brain Hippocampus Middle	brain
22	chr5:92023600-92024200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
23	chr5:92023600-92024200	Active TSS	Fetal Brain Male	brain
24	chr5:92023600-92024200	Active TSS	Osteobl	bone
25	chr5:92023600-92024400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr5:92023600-92024400	Active TSS	Brain Inferior Temporal Lobe	brain

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