Variant report

Variant	rs13355965
Chromosome Location	chr5:5221175-5221176
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10068338	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12654769	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12655182	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2964436	0.85[ASN][1000 genomes]
rs6884787	0.85[ASN][1000 genomes]
rs73037129	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7720497	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024784	chr5:4980979-5391231	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1032719	chr5:5102763-5387406	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv537621	chr5:5102763-5387406	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:5185200-5262800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:5199000-5240000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr5:5199800-5228200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr5:5200200-5252800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr5:5201400-5223000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr5:5201400-5226000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr5:5202600-5240200	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr5:5205400-5222400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr5:5209600-5222000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr5:5218400-5221200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr5:5218400-5222600	Weak transcription	Fetal Kidney	kidney
12	chr5:5219000-5221400	Enhancers	Fetal Brain Male	brain
13	chr5:5220400-5221600	Enhancers	Fetal Muscle Trunk	muscle
14	chr5:5220600-5221600	Enhancers	Psoas Muscle	Psoas
15	chr5:5220600-5221800	Enhancers	HSMMtube	muscle
16	chr5:5220600-5222400	Enhancers	Fetal Muscle Leg	muscle
17	chr5:5220800-5222000	Enhancers	HSMM	muscle
18	chr5:5220800-5222400	Enhancers	NH-A	brain
19	chr5:5221000-5221200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
20	chr5:5221000-5221200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
21	chr5:5221000-5221400	Enhancers	Ovary	ovary
22	chr5:5221000-5221600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr5:5221000-5221800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr5:5221000-5222400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr5:5221000-5222400	Enhancers	Fetal Stomach	stomach

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