Variant report

Variant	rs13356011
Chromosome Location	chr5:147467627-147467628
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033838	chr5:147360521-147484014	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv933225	chr5:147395849-147486560	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv883015	chr5:147404281-147751035	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv830515	chr5:147460852-147602247	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv934268	chr5:147466236-147467945	Weak transcription Enhancers Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147450400-147469000	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr5:147450600-147468600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:147450800-147474000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr5:147451000-147470000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr5:147454000-147470000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:147455600-147469000	Weak transcription	Esophagus	oesophagus
7	chr5:147462600-147471600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:147464000-147469800	Enhancers	Hela-S3	cervix
9	chr5:147464200-147491200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr5:147464400-147469800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr5:147464400-147488800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr5:147465600-147469000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr5:147466200-147469600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr5:147466200-147471600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr5:147467200-147469600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr5:147467200-147469600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr5:147467200-147469600	Weak transcription	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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