Variant report

Variant	rs13356301
Chromosome Location	chr5:112589429-112589430
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:112585167..112587277-chr5:112587981..112591044,3	MCF-7	breast:
2	chr5:112579792..112582768-chr5:112586295..112589549,3	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs13356847	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1562018	1.00[AMR][1000 genomes]
rs28606657	0.82[AMR][1000 genomes]
rs28637239	1.00[AMR][1000 genomes]
rs510922	0.81[AMR][1000 genomes]
rs57867880	1.00[AMR][1000 genomes]
rs73778991	0.82[AMR][1000 genomes]
rs73779002	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv882718	chr5:112519471-112674376	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv882719	chr5:112568212-112706511	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112572400-112590400	Weak transcription	Liver	Liver
2	chr5:112580600-112597400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:112581400-112590800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:112582800-112601000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr5:112583000-112604600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr5:112583600-112599800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr5:112586000-112590800	Weak transcription	Small Intestine	intestine
8	chr5:112586000-112593000	Weak transcription	Brain Angular Gyrus	brain
9	chr5:112586400-112590800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr5:112586600-112591200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr5:112586600-112598800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr5:112586600-112623600	Weak transcription	Pancreas	Pancrea
13	chr5:112586800-112590800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr5:112586800-112592000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr5:112586800-112598800	Weak transcription	Fetal Kidney	kidney
16	chr5:112586800-112599400	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr5:112587000-112590200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr5:112587000-112594600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr5:112587200-112591400	Weak transcription	NHDF-Ad	bronchial
20	chr5:112587200-112599400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr5:112587600-112591400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr5:112587600-112617000	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr5:112588000-112590200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr5:112588000-112591400	Weak transcription	Fetal Heart	heart
25	chr5:112588000-112591400	Weak transcription	Fetal Stomach	stomach
26	chr5:112588000-112592000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr5:112588000-112592400	Weak transcription	Psoas Muscle	Psoas
28	chr5:112588000-112594800	Weak transcription	NHEK	skin
29	chr5:112588000-112598600	Weak transcription	Fetal Lung	lung
30	chr5:112588000-112601200	Weak transcription	HMEC	breast
31	chr5:112588200-112591000	Weak transcription	Adipose Nuclei	Adipose
32	chr5:112588200-112594800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr5:112588600-112591400	Weak transcription	Fetal Muscle Leg	muscle
34	chr5:112588800-112590600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr5:112589000-112592400	Weak transcription	Right Atrium	heart
36	chr5:112589000-112592800	Weak transcription	Right Ventricle	heart
37	chr5:112589000-112594000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr5:112589200-112591000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr5:112589200-112593200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr5:112589200-112610600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr5:112589400-112590400	Weak transcription	Ovary	ovary
42	chr5:112589400-112591400	Weak transcription	Left Ventricle	heart
43	chr5:112589400-112602200	Weak transcription	Esophagus	oesophagus

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