Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10043994	0.89[CEU][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10059709	1.00[ASW][hapmap]
rs10064893	1.00[ASW][hapmap]
rs10072637	0.89[CEU][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10077672	0.89[CEU][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10514866	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11738043	1.00[ASW][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap]
rs11740402	1.00[ASW][hapmap]
rs11747768	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13328160	1.00[ASW][hapmap]
rs13328226	1.00[ASW][hapmap]
rs17528473	1.00[ASW][hapmap]
rs17725522	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17727615	0.94[MKK][hapmap]
rs55777000	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57695545	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs60958690	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9292202	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9292205	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9292206	1.00[ASW][hapmap];0.89[CEU][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023628	chr5:58557950-58757438	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv917274	chr5:58565291-58814374	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1030117	chr5:58587672-58637179	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1030716	chr5:58636116-58718362	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58625000-58644600	Weak transcription	Left Ventricle	heart
2	chr5:58627400-58641600	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr5:58634400-58636800	Weak transcription	Psoas Muscle	Psoas
4	chr5:58634400-58647800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr5:58635200-58640200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr5:58635200-58652600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr5:58635600-58637400	Weak transcription	Fetal Brain Male	brain
8	chr5:58635800-58636800	Weak transcription	A549	lung
9	chr5:58636000-58637400	Weak transcription	Fetal Heart	heart

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