Variant report

Variant	rs13359555
Chromosome Location	chr5:124346420-124346421
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10043770	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10155594	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13357021	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28620272	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28697281	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3936060	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4272129	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5027562	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6862525	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6888931	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7707465	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7708412	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7728062	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9327345	0.93[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9327346	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9327347	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882822	chr5:124250018-124449375	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830474	chr5:124263628-124431299	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124323400-124348600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:124342000-124347000	Weak transcription	Fetal Kidney	kidney
3	chr5:124342200-124346600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr5:124342200-124347000	Weak transcription	Fetal Intestine Large	intestine
5	chr5:124342400-124348600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr5:124342800-124347800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr5:124343600-124347000	Weak transcription	Primary B cells from peripheral blood	blood
8	chr5:124344600-124347600	Weak transcription	Primary B cells from cord blood	blood
9	chr5:124344800-124346800	Weak transcription	Dnd41	blood
10	chr5:124345000-124347800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr5:124345000-124348600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr5:124345200-124347400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:124346000-124346800	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr5:124346000-124347200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr5:124346000-124349200	Enhancers	Pancreas	Pancrea
16	chr5:124346200-124346800	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr5:124346200-124347200	Flanking Active TSS	GM12878-XiMat	blood
18	chr5:124346400-124346800	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr5:124346400-124348600	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr5:124346400-124350200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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