Variant report

Variant	rs13360093
Chromosome Location	chr5:56984385-56984386
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16887331	0.82[ASN][1000 genomes]
rs55836829	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57765289	0.82[ASN][1000 genomes]
rs57880872	1.00[EUR][1000 genomes]
rs6450430	0.81[ASN][1000 genomes]
rs6880713	1.00[EUR][1000 genomes]
rs73085582	1.00[EUR][1000 genomes]
rs73085583	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525330	chr5:56931673-57320343	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2756302	chr5:56978143-57180143	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:56972400-56988400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr5:56979600-56986800	Weak transcription	K562	blood
3	chr5:56979600-56987000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr5:56980400-56987200	Weak transcription	Ovary	ovary
5	chr5:56984000-56988000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr5:56984000-56988200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr5:56984000-56988400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr5:56984200-56988400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr5:56984200-56988400	Weak transcription	HMEC	breast
10	chr5:56984200-56988400	Weak transcription	NHEK	skin
11	chr5:56984200-56988600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links