Variant report

Variant	rs13360805
Chromosome Location	chr5:147313783-147313784
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10038932	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10053960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10067230	0.82[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10077852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13360004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13436950	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17107489	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17107498	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59004065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3334831	chr5:147165950-147339765	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1028477	chr5:147255013-147416217	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147307200-147314200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr5:147312200-147314400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr5:147313200-147318800	Weak transcription	Esophagus	oesophagus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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