Variant report

Variant	rs13361585
Chromosome Location	chr5:180076814-180076815
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr5:180076720-180076870	HUVEC	blood vessel:	n/a	chr5:180076766-180076779
2	ZBTB7A	chr5:180076643-180077039	ECC-1	luminal epithelium:	n/a	chr5:180076765-180076773
3	E2F6	chr5:180076730-180077146	H1-hESC	embryonic stem cell:	n/a	n/a
4	ZBTB7A	chr5:180076667-180076980	ECC-1	luminal epithelium:	n/a	chr5:180076765-180076773
5	ZBTB7A	chr5:180076671-180076821	K562	blood:	n/a	chr5:180076765-180076773
6	POLR2A	chr5:180076772-180077381	H1-neurons	neurons:	n/a	n/a
7	MAX	chr5:180076685-180077081	H1-hESC	embryonic stem cell:	n/a	n/a
8	POLR2A	chr5:180076775-180077007	H1-neurons	neurons:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:180076787..180079357-chr5:180092252..180095157,2	K562	blood:

Variant related genes	Relation type
FLT4	TF binding region

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10479475	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10479476	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10479477	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10479579	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10516142	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13354902	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13354923	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13356641	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13356643	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13362185	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34920558	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57402539	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57489304	1.00[ASN][1000 genomes]
rs58122296	0.90[AFR][1000 genomes]
rs60081129	1.00[ASN][1000 genomes]
rs73812636	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73812638	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73812639	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73812640	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73812641	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73812642	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73812643	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73812644	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73812647	1.00[ASN][1000 genomes]
rs73812648	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030697	chr5:179710469-180686563	ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	184 gene(s)	inside rSNPs	diseases
2	nsv1026417	chr5:179721376-180291360	Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv1031836	chr5:179742033-180676122	Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
4	nsv537984	chr5:179742033-180676122	Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
5	nsv949199	chr5:179743553-180696889	Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	182 gene(s)	inside rSNPs	diseases
6	esv2762572	chr5:179996987-180183359	Bivalent Enhancer Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv533204	chr5:180008319-180273638	Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	69 gene(s)	inside rSNPs	diseases
8	nsv883294	chr5:180010639-180094042	Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv883295	chr5:180010639-180102226	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv1015152	chr5:180014800-180567614	Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	89 gene(s)	inside rSNPs	diseases
11	nsv537987	chr5:180014800-180567614	Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	89 gene(s)	inside rSNPs	diseases
12	nsv883297	chr5:180033292-180094042	Genic enhancers Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
13	esv1824954	chr5:180034220-180080178	Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
14	nsv883298	chr5:180047412-180081766	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	nsv1034993	chr5:180059323-180686563	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	161 gene(s)	inside rSNPs	diseases
16	nsv534263	chr5:180063182-180696806	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	166 gene(s)	inside rSNPs	diseases
17	nsv1033330	chr5:180063241-180256969	Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
18	nsv537988	chr5:180063241-180256969	Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
19	nsv830565	chr5:180067633-180191643	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
20	nsv1029282	chr5:180069992-180251755	Flanking Bivalent TSS/Enh Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
21	nsv1025669	chr5:180069992-180686563	Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	161 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:180075400-180077000	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr5:180075400-180077000	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
3	chr5:180075400-180077200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
4	chr5:180075400-180077600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
5	chr5:180075400-180077600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
6	chr5:180075600-180077000	Bivalent/Poised TSS	Fetal Brain Female	brain
7	chr5:180075600-180077200	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
8	chr5:180075600-180077400	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
9	chr5:180075600-180077400	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
10	chr5:180075600-180077400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
11	chr5:180075600-180077400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
12	chr5:180075600-180077400	Bivalent/Poised TSS	Primary T regulatory cells fromperipheralblood	blood
13	chr5:180075600-180077600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
14	chr5:180075600-180077600	Bivalent Enhancer	Fetal Brain Male	brain
15	chr5:180075600-180077600	Bivalent/Poised TSS	Psoas Muscle	Psoas
16	chr5:180075600-180077600	Active TSS	Right Atrium	heart
17	chr5:180075800-180077000	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr5:180075800-180077000	Active TSS	Primary T helper naive cells fromperipheralblood	blood
19	chr5:180075800-180077200	Active TSS	Pancreatic Islets	Pancreatic Islet
20	chr5:180075800-180077200	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
21	chr5:180075800-180077200	Bivalent/Poised TSS	Skeletal Muscle Female	skeletal muscle
22	chr5:180075800-180077400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
23	chr5:180075800-180077400	Bivalent/Poised TSS	NH-A	brain
24	chr5:180075800-180077600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr5:180075800-180077800	Bivalent/Poised TSS	Primary T cells from cord blood	blood
26	chr5:180076000-180077000	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr5:180076000-180077000	Active TSS	Aorta	Aorta
28	chr5:180076000-180077000	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
29	chr5:180076000-180077200	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr5:180076000-180077200	Active TSS	Left Ventricle	heart
31	chr5:180076000-180077400	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
32	chr5:180076000-180077400	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
33	chr5:180076000-180077400	Active TSS	Gastric	stomach
34	chr5:180076000-180077400	Bivalent/Poised TSS	HSMM	muscle
35	chr5:180076000-180077600	Active TSS	Primary T killer naive cells fromperipheralblood	blood
36	chr5:180076200-180077000	Bivalent/Poised TSS	Spleen	Spleen
37	chr5:180076200-180077400	Flanking Bivalent TSS/Enh	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr5:180076200-180077600	Bivalent/Poised TSS	Primary T helper cells PMA-I stimulated	--
39	chr5:180076400-180077000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
40	chr5:180076400-180077200	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr5:180076400-180077400	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr5:180076400-180077400	Bivalent/Poised TSS	Muscle Satellite Cultured Cells	--
43	chr5:180076400-180077400	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
44	chr5:180076400-180077400	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
45	chr5:180076400-180077400	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
46	chr5:180076400-180077400	Bivalent/Poised TSS	HSMMtube	muscle
47	chr5:180076400-180077600	Active TSS	Right Ventricle	heart
48	chr5:180076600-180077200	Active TSS	Pancreas	Pancrea
49	chr5:180076600-180077400	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr5:180076600-180077400	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin01	Skin

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