Variant report

Variant	rs13361661
Chromosome Location	chr5:151565585-151565586
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10052614	1.00[AMR][1000 genomes]
rs10057903	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10064526	1.00[AMR][1000 genomes]
rs10074742	1.00[AMR][1000 genomes]
rs28374741	1.00[AMR][1000 genomes]
rs28587977	1.00[AMR][1000 genomes]
rs28751907	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760935	chr5:151463117-151586051	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv883040	chr5:151471642-151596273	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1023828	chr5:151522149-151956217	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv5073	chr5:151551846-151597040	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151563200-151565800	Enhancers	Ovary	ovary
2	chr5:151563600-151566400	Enhancers	Aorta	Aorta
3	chr5:151564800-151565600	Enhancers	Adipose Nuclei	Adipose
4	chr5:151565000-151566600	Enhancers	Stomach Mucosa	stomach
5	chr5:151565200-151565600	Enhancers	HepG2	liver
6	chr5:151565400-151565600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr5:151565400-151565800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr5:151565400-151565800	Enhancers	Left Ventricle	heart
9	chr5:151565400-151565800	Enhancers	Lung	lung
10	chr5:151565400-151565800	Enhancers	Right Atrium	heart
11	chr5:151565400-151566000	Enhancers	Right Ventricle	heart
12	chr5:151565400-151566400	Enhancers	Gastric	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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