Variant report

Variant	rs13361744
Chromosome Location	chr5:80455667-80455668
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs13340388	1.00[EUR][1000 genomes]
rs34039392	1.00[EUR][1000 genomes]
rs56157507	1.00[EUR][1000 genomes]
rs58071944	1.00[EUR][1000 genomes]
rs59441376	1.00[EUR][1000 genomes]
rs59626246	1.00[EUR][1000 genomes]
rs59719994	1.00[EUR][1000 genomes]
rs60064859	1.00[EUR][1000 genomes]
rs61194622	1.00[EUR][1000 genomes]
rs61629530	1.00[EUR][1000 genomes]
rs6870928	1.00[EUR][1000 genomes]
rs73128867	1.00[EUR][1000 genomes]
rs73766146	1.00[EUR][1000 genomes]
rs73766153	1.00[EUR][1000 genomes]
rs73766159	1.00[EUR][1000 genomes]
rs73766199	1.00[EUR][1000 genomes]
rs73768003	1.00[EUR][1000 genomes]
rs9293834	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024844	chr5:79862428-80860430	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv1025799	chr5:80436584-80485252	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:80442200-80460800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:80442200-80465600	Weak transcription	HepG2	liver
3	chr5:80444000-80457000	Weak transcription	Brain Cingulate Gyrus	brain
4	chr5:80446200-80466000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr5:80448600-80475800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr5:80449400-80458400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr5:80449800-80475800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr5:80451800-80462600	Weak transcription	Primary T cells from cord blood	blood
9	chr5:80452000-80475400	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr5:80452000-80481200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr5:80452200-80463400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr5:80452200-80464600	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr5:80455400-80475800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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