Variant report

Variant	rs13361795
Chromosome Location	chr5:52877762-52877763
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:52776908..52778697-chr5:52877024..52879760,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000134363	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10052720	1.00[AMR][1000 genomes]
rs10067133	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10440615	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs28541946	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752745	chr5:52422063-53343529	Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1032632	chr5:52667145-53655624	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv880868	chr5:52799618-53002783	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv880689	chr5:52847995-53002783	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:52857800-52883000	Weak transcription	Hela-S3	cervix
2	chr5:52857800-52884000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr5:52857800-52892800	Weak transcription	Primary B cells from cord blood	blood
4	chr5:52857800-52898800	Weak transcription	HSMM	muscle
5	chr5:52858000-52899800	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr5:52858000-52900400	Weak transcription	Fetal Kidney	kidney
7	chr5:52858200-52880400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr5:52858200-52885000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr5:52858200-52897200	Weak transcription	NHEK	skin
10	chr5:52858400-52895000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr5:52858400-52899800	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr5:52860000-52909000	Weak transcription	Small Intestine	intestine
13	chr5:52860200-52885600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr5:52860600-52884800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr5:52861600-52894600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr5:52865000-52900400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr5:52865200-52885200	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr5:52865600-52883400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr5:52865600-52898400	Weak transcription	Fetal Lung	lung
20	chr5:52865600-52899800	Weak transcription	Primary hematopoietic stem cells	blood
21	chr5:52866200-52883400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr5:52866400-52884200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr5:52867600-52888400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr5:52868200-52885200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr5:52868400-52882000	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr5:52869600-52896000	Weak transcription	Fetal Stomach	stomach
27	chr5:52870200-52892000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr5:52871000-52881400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr5:52871200-52877800	Weak transcription	Fetal Muscle Leg	muscle
30	chr5:52872000-52892800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr5:52872200-52885000	Weak transcription	Primary T cells from cord blood	blood
32	chr5:52873000-52884800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr5:52873000-52887000	Weak transcription	Brain Hippocampus Middle	brain
34	chr5:52873000-52889200	Weak transcription	A549	lung
35	chr5:52873000-52900400	Weak transcription	Gastric	stomach
36	chr5:52873200-52899000	Weak transcription	Right Atrium	heart
37	chr5:52873400-52878200	Weak transcription	Right Ventricle	heart
38	chr5:52873400-52885400	Weak transcription	Left Ventricle	heart
39	chr5:52873400-52889800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr5:52874400-52884000	Weak transcription	Fetal Intestine Small	intestine
41	chr5:52874400-52885200	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr5:52874400-52888400	Weak transcription	Fetal Heart	heart
43	chr5:52874600-52878000	Weak transcription	Ovary	ovary
44	chr5:52874600-52889800	Weak transcription	HepG2	liver
45	chr5:52875000-52878400	Weak transcription	Colon Smooth Muscle	Colon
46	chr5:52875000-52885400	Weak transcription	Aorta	Aorta
47	chr5:52875000-52900000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr5:52875400-52899200	Weak transcription	Monocytes-CD14+_RO01746	blood
49	chr5:52875600-52889400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr5:52875800-52878200	Weak transcription	Psoas Muscle	Psoas

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