Variant report

Variant rs13362162
Chromosome Location chr5:59966572-59966573
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:46 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:59926400-59967800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
2 chr5:59933600-59981000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
3 chr5:59943400-59977000 Weak transcription H1 Cell Line embryonic stem cell
4 chr5:59954000-59980200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
5 chr5:59954600-59969200 Weak transcription HUES64 Cell Line embryonic stem cell
6 chr5:59955000-59966600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
7 chr5:59956800-59981800 Weak transcription Monocytes-CD14+_RO01746 blood
8 chr5:59957000-59977000 Weak transcription iPS-18 Cell Line embryonic stem cell
9 chr5:59958800-59966600 Weak transcription H9 Cell Line embryonic stem cell
10 chr5:59960000-59968600 Weak transcription GM12878-XiMat blood
11 chr5:59960000-59970600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
12 chr5:59960400-59968600 Weak transcription A549 lung
13 chr5:59962400-59970800 Weak transcription Cortex derived primary cultured neurospheres brain
14 chr5:59962600-59966600 Weak transcription Thymus Thymus
15 chr5:59962600-59969000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
16 chr5:59962600-59969200 Weak transcription HUES48 Cell Line embryonic stem cell
17 chr5:59962600-59969400 Weak transcription HUES6 Cell Line embryonic stem cell
18 chr5:59962600-59970200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
19 chr5:59962600-59977000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
20 chr5:59962600-59980000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
21 chr5:59962600-59980800 Weak transcription Fetal Thymus thymus
22 chr5:59962600-59981000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
23 chr5:59962600-59981600 Weak transcription Fetal Muscle Leg muscle
24 chr5:59962600-59985600 Weak transcription Primary monocytes fromperipheralblood blood
25 chr5:59962600-59986800 Weak transcription Fetal Stomach stomach
26 chr5:59962600-59990000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
27 chr5:59962800-59966600 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
28 chr5:59962800-59966600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
29 chr5:59962800-59968600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
30 chr5:59962800-59974000 Weak transcription Dnd41 blood
31 chr5:59962800-59976600 Weak transcription iPS-20b Cell Line embryonic stem cell
32 chr5:59962800-59978600 Weak transcription Primary hematopoietic stem cells short term culture blood
33 chr5:59962800-59978800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
34 chr5:59963600-59966600 Weak transcription Gastric stomach
35 chr5:59964600-59974600 Enhancers Fetal Intestine Large intestine
36 chr5:59964800-59974200 Enhancers Fetal Intestine Small intestine
37 chr5:59965000-59968000 Enhancers Duodenum Mucosa Duodenum
38 chr5:59965400-59966600 Weak transcription Small Intestine intestine
39 chr5:59965400-59967400 Weak transcription Liver Liver
40 chr5:59965600-59969000 Weak transcription Colonic Mucosa Colon
41 chr5:59966000-59988800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
42 chr5:59966200-59970400 Enhancers Stomach Mucosa stomach
43 chr5:59966400-59966600 Strong transcription Placenta Placenta
44 chr5:59966400-59966800 Genic enhancers HepG2 liver
45 chr5:59966400-59967000 Flanking Active TSS Rectal Mucosa Donor 29 rectum
46 chr5:59966400-59968600 Enhancers Rectal Mucosa Donor 31 rectum

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