The 2.0 version of rSNPBase
Home
Search
Document
What's New
Tutorial
Data Content
Download
Feedback
About Us
Variant report
Variant
rs13362349
Chromosome Location
chr5:71033592-71033593
allele
A/C/G/T
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:0)
CpG islands (count:0)
Chromatin interactive region (count:3)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
No data
No data
(count:3 , 50 per page) page:
1
No.
Distal block
Cell Line
Cell type
Cell Stage
1
chr5:71015848..71018606-chr5:71033365..71035031,2
MCF-7
breast:
2
chr5:70750488..70752781-chr5:71032499..71035254,2
K562
blood:
3
chr5:71029826..71032635-chr5:71032943..71035755,2
K562
blood:
No data
No data
No data
Variant related genes
Relation type
ENSG00000145734
Chromatin interaction
Extended variants information (count: 6 )
Associated traits (count: 1 )
rSNPs within LD-proxies of this variant (count:6)
rs_ID
r
2
[population]
rs10054690
0.93[ASN][1000 genomes]
rs4361494
0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4704211
0.93[ASN][1000 genomes]
rs6453135
0.90[ASN][1000 genomes]
rs6453136
0.88[ASN][1000 genomes]
rs6453137
0.88[ASN][1000 genomes]
mRNA abundance (count:1)
SNP
Gene
Cis/trans
Tissue
Source
rs13362349
FAM169A
cis
parietal
SCAN
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links