Variant report

Variant	rs13374415
Chromosome Location	chr1:154788112-154788113
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:154783206..154790651-chr1:154790786..154795764,8	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10157394	1.00[AMR][1000 genomes]
rs57453542	1.00[AMR][1000 genomes]
rs58674727	1.00[AMR][1000 genomes]
rs60328853	1.00[AMR][1000 genomes]
rs61104084	1.00[AMR][1000 genomes]
rs6690287	1.00[AMR][1000 genomes]
rs73001459	1.00[AMR][1000 genomes]
rs73001465	1.00[AMR][1000 genomes]
rs73001483	1.00[AMR][1000 genomes]
rs73003213	1.00[AMR][1000 genomes]
rs73003288	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948413	chr1:153974621-154797272	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
2	nsv532579	chr1:154548165-155262692	Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	575 gene(s)	inside rSNPs	diseases
3	nsv427797	chr1:154559115-154933717	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv470740	chr1:154568683-154796895	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv464050	chr1:154568683-154801247	Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv547958	chr1:154568683-154801247	Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:154783200-154792600	Weak transcription	Lung	lung
2	chr1:154783400-154788800	Weak transcription	Colon Smooth Muscle	Colon
3	chr1:154785600-154792600	Weak transcription	Right Atrium	heart
4	chr1:154786200-154794800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr1:154786600-154788800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr1:154786600-154791000	Weak transcription	Right Ventricle	heart
7	chr1:154786600-154792200	Weak transcription	Left Ventricle	heart
8	chr1:154786600-154794000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr1:154786600-154801800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr1:154786800-154788200	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr1:154786800-154789200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr1:154786800-154791400	Weak transcription	Stomach Smooth Muscle	stomach
13	chr1:154786800-154792600	Weak transcription	Esophagus	oesophagus
14	chr1:154786800-154795200	Weak transcription	Brain Hippocampus Middle	brain
15	chr1:154787000-154788200	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr1:154787000-154788400	Weak transcription	NHEK	skin
17	chr1:154787000-154788600	Weak transcription	HMEC	breast
18	chr1:154787000-154789000	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr1:154787000-154789800	Weak transcription	Fetal Muscle Leg	muscle
20	chr1:154787000-154792000	Weak transcription	Brain Anterior Caudate	brain
21	chr1:154787000-154792000	Weak transcription	Gastric	stomach
22	chr1:154787000-154794800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr1:154787000-154795600	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr1:154787000-154800400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr1:154787000-154805400	Weak transcription	Brain Cingulate Gyrus	brain
26	chr1:154787200-154788600	Strong transcription	GM12878-XiMat	blood
27	chr1:154787200-154794600	Weak transcription	Brain Germinal Matrix	brain
28	chr1:154787200-154795200	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr1:154787400-154789000	Weak transcription	Fetal Muscle Trunk	muscle
30	chr1:154787400-154790400	Weak transcription	Fetal Brain Female	brain
31	chr1:154787400-154790800	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr1:154787400-154791600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr1:154787400-154795000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links