Variant report

Variant	rs13374604
Chromosome Location	chr1:180920893-180920894
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:180920141..180924832-chr1:180927695..180934337,6	MCF-7	breast:
2	chr1:180913861..180917662-chr1:180919365..180922791,5	K562	blood:
3	chr1:180918890..180922237-chr1:180924310..180927954,4	K562	blood:
4	chr1:180919620..180921872-chr1:180924310..180926710,2	K562	blood:
5	chr1:180914551..180916249-chr1:180920507..180922791,2	K562	blood:

Variant related genes	Relation type
ENSG00000251520	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs13376573	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55668281	1.00[AMR][1000 genomes]
rs74135842	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014404	chr1:180770155-181090200	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv872579	chr1:180881148-180931508	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv2754938	chr1:180919343-180934343	Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:180896800-180921800	Weak transcription	Pancreas	Pancrea
2	chr1:180899000-180922600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr1:180900000-180922800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr1:180904800-180922400	Weak transcription	Colonic Mucosa	Colon
5	chr1:180905400-180922400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr1:180905400-180940600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:180907800-180922400	Weak transcription	NHDF-Ad	bronchial
8	chr1:180908600-180921800	Weak transcription	Right Atrium	heart
9	chr1:180911600-180921600	Weak transcription	Fetal Heart	heart
10	chr1:180911600-180928400	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr1:180911800-180927600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr1:180912400-180922400	Weak transcription	Stomach Mucosa	stomach
13	chr1:180913200-180921400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr1:180913400-180921000	Strong transcription	Fetal Intestine Small	intestine
15	chr1:180914800-180922600	Weak transcription	Ovary	ovary
16	chr1:180915400-180922800	Enhancers	Placenta Amnion	Placenta Amnion
17	chr1:180915600-180922400	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr1:180916000-180922000	Weak transcription	Primary hematopoietic stem cells	blood
19	chr1:180916200-180922600	Weak transcription	Colon Smooth Muscle	Colon
20	chr1:180916400-180922400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr1:180916400-180922600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr1:180916400-180922600	Weak transcription	HSMM	muscle
23	chr1:180916600-180921800	Weak transcription	HepG2	liver
24	chr1:180916800-180921400	Strong transcription	Fetal Intestine Large	intestine
25	chr1:180916800-180922000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr1:180916800-180922200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr1:180916800-180922600	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr1:180916800-180922600	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr1:180917000-180921000	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr1:180917000-180922400	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr1:180917200-180922800	Enhancers	Placenta	Placenta
32	chr1:180917400-180922800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr1:180917600-180922600	Weak transcription	Brain Germinal Matrix	brain
34	chr1:180917800-180922400	Weak transcription	Primary B cells from peripheral blood	blood
35	chr1:180917800-180922400	Weak transcription	NHEK	skin
36	chr1:180918000-180921200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr1:180918000-180930000	Weak transcription	HSMMtube	muscle
38	chr1:180918200-180921000	Genic enhancers	Fetal Thymus	thymus
39	chr1:180918200-180922600	Weak transcription	Primary B cells from cord blood	blood
40	chr1:180918200-180922800	Weak transcription	Psoas Muscle	Psoas
41	chr1:180918400-180921200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr1:180918400-180921400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr1:180918400-180922400	Weak transcription	HMEC	breast
44	chr1:180918400-180929000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr1:180918400-180929800	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr1:180918400-180930000	Weak transcription	Hela-S3	cervix
47	chr1:180918600-180921800	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr1:180918600-180921800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
49	chr1:180918600-180939800	Weak transcription	K562	blood
50	chr1:180918600-180944800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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