Variant report

Variant	rs13374779
Chromosome Location	chr1:155542124-155542125
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:155531534..155534319-chr1:155539885..155542832,3	MCF-7	breast:
2	chr1:155539915..155542656-chr1:155550339..155552993,2	K562	blood:
3	chr1:155531202..155533285-chr1:155540446..155542865,2	K562	blood:
4	chr1:155294204..155296064-chr1:155541454..155544136,2	MCF-7	breast:
5	chr1:155533054..155535636-chr1:155540451..155542741,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000235919	Chromatin interaction
ENSG00000160753	Chromatin interaction
ENSG00000116539	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10158935	0.85[AFR][1000 genomes]
rs13375894	0.88[AFR][1000 genomes]
rs16836971	0.88[AFR][1000 genomes]
rs57113007	1.00[AMR][1000 genomes]
rs57208252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58774418	0.85[AFR][1000 genomes]
rs59287240	0.88[AFR][1000 genomes]
rs59992688	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs676670	1.00[AMR][1000 genomes]
rs7550827	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529709	chr1:155154933-155757219	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	450 gene(s)	inside rSNPs	diseases
2	esv33869	chr1:155223283-155917961	Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	187 gene(s)	inside rSNPs	diseases
3	nsv872468	chr1:155413304-155549562	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	esv3431739	chr1:155514331-155664183	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
5	esv3388968	chr1:155532335-155658278	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155533400-155549000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:155534200-155542800	Weak transcription	Esophagus	oesophagus
3	chr1:155534200-155543000	Weak transcription	Brain Germinal Matrix	brain
4	chr1:155534200-155547600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr1:155534400-155544200	Weak transcription	Fetal Brain Female	brain
6	chr1:155534600-155542200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr1:155534600-155542200	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr1:155534600-155542400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr1:155534600-155542400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr1:155534600-155543000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr1:155534600-155543000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr1:155534600-155560400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr1:155534600-155565800	Weak transcription	Brain Hippocampus Middle	brain
14	chr1:155534800-155542200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr1:155534800-155542600	Weak transcription	NHLF	lung
16	chr1:155534800-155543000	Weak transcription	HepG2	liver
17	chr1:155534800-155543200	Weak transcription	Pancreas	Pancrea
18	chr1:155534800-155544800	Weak transcription	Brain Anterior Caudate	brain
19	chr1:155534800-155558200	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr1:155534800-155561800	Weak transcription	Brain Cingulate Gyrus	brain
21	chr1:155534800-155565600	Weak transcription	Brain Angular Gyrus	brain
22	chr1:155534800-155568400	Weak transcription	Thymus	Thymus
23	chr1:155535000-155543200	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr1:155535000-155543600	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr1:155535000-155560000	Weak transcription	Right Ventricle	heart
26	chr1:155535000-155570400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr1:155535200-155542400	Weak transcription	Small Intestine	intestine
28	chr1:155535200-155542800	Weak transcription	Placenta	Placenta
29	chr1:155535400-155542800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr1:155535400-155543800	Weak transcription	Primary hematopoietic stem cells	blood
31	chr1:155535400-155564000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr1:155536000-155542600	Weak transcription	NHDF-Ad	bronchial
33	chr1:155536000-155544000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr1:155536000-155545200	Weak transcription	HMEC	breast
35	chr1:155536200-155542800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr1:155536200-155543200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr1:155536200-155544400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr1:155537000-155543800	Weak transcription	Primary B cells from cord blood	blood
39	chr1:155537000-155544400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr1:155537000-155544800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr1:155537000-155545000	Weak transcription	NHEK	skin
42	chr1:155537600-155542800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr1:155538200-155560000	Weak transcription	Lung	lung
44	chr1:155539400-155542200	Strong transcription	Primary T cells fromperipheralblood	blood
45	chr1:155540000-155542200	Strong transcription	Fetal Muscle Leg	muscle
46	chr1:155540200-155544800	Weak transcription	GM12878-XiMat	blood
47	chr1:155540200-155547800	Weak transcription	Spleen	Spleen
48	chr1:155540400-155542200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr1:155540400-155542400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr1:155540400-155542400	Weak transcription	Osteobl	bone

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