Variant report

Variant	rs13375020
Chromosome Location	chr1:209989987-209989988
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11119346	0.96[AFR][1000 genomes]
rs11811534	0.80[AMR][1000 genomes]
rs2069068	0.96[AFR][1000 genomes]
rs7533957	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999901	chr1:209600631-210205379	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1014034	chr1:209759648-210501731	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv873139	chr1:209828955-210050794	Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209987800-209991200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:209988000-209991400	Enhancers	Fetal Thymus	thymus
3	chr1:209989000-209990000	Flanking Active TSS	NHEK	skin
4	chr1:209989200-209990000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr1:209989200-209990000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
6	chr1:209989200-209990000	Enhancers	HepG2	liver
7	chr1:209989200-209990800	Enhancers	Placenta	Placenta
8	chr1:209989200-209991200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr1:209989200-209991200	Enhancers	Esophagus	oesophagus
10	chr1:209989400-209990000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr1:209989400-209990000	Enhancers	Fetal Muscle Trunk	muscle
12	chr1:209989600-209990000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr1:209989600-209990000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr1:209989600-209990000	Flanking Active TSS	HMEC	breast
15	chr1:209989600-209996000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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