Variant report

Variant	rs13375382
Chromosome Location	chr1:62102926-62102927
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-INADL-1	chr1:62102824-62102980	XLOC_000227

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs13375459	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13375468	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13376016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13376017	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13376530	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13376652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17122557	0.98[AFR][1000 genomes]
rs2132395	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2132396	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv994970	chr1:61693951-62199657	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1006142	chr1:61696142-62119763	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv534980	chr1:61696142-62119763	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv916868	chr1:61700430-62119762	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv817402	chr1:61703965-62119762	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv1010797	chr1:61703966-62125970	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
7	nsv1000294	chr1:61746280-62350718	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
8	nsv1007318	chr1:62083960-62113102	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv1831777	chr1:62086216-62119201	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv508226	chr1:62091093-62140604	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:62099400-62104800	Weak transcription	Right Atrium	heart
2	chr1:62101400-62103000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr1:62101800-62103000	Enhancers	HUVEC	blood vessel
4	chr1:62102200-62103000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr1:62102200-62103000	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr1:62102200-62103000	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr1:62102200-62103200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr1:62102400-62103000	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr1:62102400-62103200	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr1:62102600-62103000	Enhancers	Fetal Lung	lung
11	chr1:62102600-62106600	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr1:62102600-62107000	Enhancers	Ovary	ovary
13	chr1:62102800-62103000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr1:62102800-62103200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr1:62102800-62103200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr1:62102800-62103800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr1:62102800-62104600	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr1:62102800-62106000	Enhancers	Adipose Nuclei	Adipose
19	chr1:62102800-62106400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr1:62102800-62107200	Weak transcription	Stomach Mucosa	stomach

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