Variant report

Variant	rs13375638
Chromosome Location	chr1:59207324-59207325
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17118142	1.00[AMR][1000 genomes]
rs6683199	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7520440	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7520603	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754829	chr1:59197556-59215791	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:59205200-59211200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:59205600-59210800	Weak transcription	HMEC	breast
3	chr1:59206000-59207800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr1:59206000-59211200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr1:59206200-59207400	Weak transcription	Colon Smooth Muscle	Colon
6	chr1:59206200-59214200	Weak transcription	Fetal Kidney	kidney
7	chr1:59206200-59221000	Weak transcription	Fetal Intestine Small	intestine
8	chr1:59206400-59207400	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr1:59206400-59207400	Weak transcription	NHDF-Ad	bronchial
10	chr1:59206400-59207600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr1:59206600-59210600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr1:59206600-59210800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr1:59206600-59211000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr1:59207200-59207600	Enhancers	Placenta Amnion	Placenta Amnion
15	chr1:59207200-59207800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr1:59207200-59208000	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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