Variant report

Variant	rs1337606
Chromosome Location	chr13:38508406-38508407
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1337598	1.00[AMR][1000 genomes]
rs1337608	1.00[AMR][1000 genomes]
rs1970298	1.00[AMR][1000 genomes]
rs2254199	1.00[AMR][1000 genomes]
rs2485487	1.00[AMR][1000 genomes]
rs2485504	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2485505	1.00[AMR][1000 genomes]
rs817730	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915901	chr13:38199035-39032633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv899996	chr13:38459224-38577056	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv899997	chr13:38480878-38518459	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv899998	chr13:38480878-38582178	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38505800-38509400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr13:38508200-38508600	Enhancers	Colon Smooth Muscle	Colon
3	chr13:38508400-38508600	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
4	chr13:38508400-38508800	Enhancers	H1 Cell Line	embryonic stem cell
5	chr13:38508400-38508800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr13:38508400-38509000	Enhancers	H9 Cell Line	embryonic stem cell
7	chr13:38508400-38509000	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr13:38508400-38509600	Active TSS	Right Ventricle	heart
9	chr13:38508400-38509800	Active TSS	Right Atrium	heart
10	chr13:38508400-38510200	Active TSS	Left Ventricle	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links