Variant report

Variant	rs13376272
Chromosome Location	chr1:154705061-154705062
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:154703220..154706226-chr1:154707743..154711907,3	MCF-7	breast:
2	chr1:154703405..154705080-chr11:65818157..65820349,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000087365	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1304059	1.00[AMR][1000 genomes]
rs1395564	1.00[AMR][1000 genomes]
rs2131899	1.00[AMR][1000 genomes]
rs61261171	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948413	chr1:153974621-154797272	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
2	nsv532579	chr1:154548165-155262692	Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	575 gene(s)	inside rSNPs	diseases
3	nsv427797	chr1:154559115-154933717	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv470740	chr1:154568683-154796895	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv464050	chr1:154568683-154801247	Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv547958	chr1:154568683-154801247	Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:154693400-154709400	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr1:154693800-154707800	Weak transcription	Primary T cells from cord blood	blood
3	chr1:154699800-154711400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:154699800-154717600	Weak transcription	Brain Substantia Nigra	brain
5	chr1:154701400-154705400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr1:154701400-154705800	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr1:154703000-154705200	Enhancers	Right Atrium	heart
8	chr1:154703200-154706600	Enhancers	Spleen	Spleen
9	chr1:154703400-154706400	Enhancers	Lung	lung
10	chr1:154703400-154707000	Genic enhancers	Fetal Stomach	stomach
11	chr1:154703600-154705200	Genic enhancers	Fetal Brain Female	brain
12	chr1:154703600-154705200	Strong transcription	GM12878-XiMat	blood
13	chr1:154703600-154705800	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr1:154703600-154708400	Weak transcription	Fetal Intestine Large	intestine
15	chr1:154703600-154715600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr1:154703800-154706400	Weak transcription	Fetal Thymus	thymus
17	chr1:154703800-154706600	Genic enhancers	Fetal Muscle Trunk	muscle
18	chr1:154703800-154706800	Enhancers	Duodenum Smooth Muscle	Duodenum
19	chr1:154703800-154709200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr1:154704000-154706000	Weak transcription	HSMM	muscle
21	chr1:154704000-154706200	Weak transcription	HSMMtube	muscle
22	chr1:154704000-154709200	Weak transcription	NHDF-Ad	bronchial
23	chr1:154704000-154709400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr1:154704200-154706200	Weak transcription	Brain Germinal Matrix	brain
25	chr1:154704200-154707600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr1:154704200-154707800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr1:154704200-154708000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr1:154704200-154709000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr1:154704200-154709000	Weak transcription	NH-A	brain
30	chr1:154704200-154712200	Weak transcription	Psoas Muscle	Psoas
31	chr1:154704200-154714200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr1:154704200-154714600	Weak transcription	Brain Cingulate Gyrus	brain
33	chr1:154704200-154718600	Weak transcription	Brain Angular Gyrus	brain
34	chr1:154704400-154705600	Bivalent Enhancer	Adipose Nuclei	Adipose
35	chr1:154704400-154706000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr1:154704400-154706000	Weak transcription	Fetal Brain Male	brain
37	chr1:154704400-154710000	Weak transcription	Brain Hippocampus Middle	brain
38	chr1:154704400-154714400	Weak transcription	Left Ventricle	heart
39	chr1:154704600-154705200	Genic enhancers	Brain Anterior Caudate	brain
40	chr1:154704600-154707600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr1:154704600-154708000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr1:154704600-154708200	Weak transcription	Esophagus	oesophagus
43	chr1:154704600-154710200	Weak transcription	Fetal Intestine Small	intestine
44	chr1:154704600-154713600	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr1:154704600-154716000	Weak transcription	Colon Smooth Muscle	Colon
46	chr1:154704800-154705200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr1:154704800-154705600	Genic enhancers	Skeletal Muscle Female	skeletal muscle
48	chr1:154704800-154706600	Enhancers	HUVEC	blood vessel
49	chr1:154704800-154723800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr1:154705000-154705600	Strong transcription	Cortex derived primary cultured neurospheres	brain

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