Variant report

Variant	rs13376413
Chromosome Location	chr1:213743746-213743747
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs13373768	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1391869	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17020954	1.00[AMR][1000 genomes]
rs28459172	1.00[AMR][1000 genomes]
rs4507981	1.00[AMR][1000 genomes]
rs58510143	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7517032	0.83[AMR][1000 genomes]
rs7519890	0.87[ASW][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832525	chr1:213580476-213782815	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3345878	chr1:213714352-213841547	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3426755	chr1:213714443-213841514	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3378592	chr1:213714463-213841484	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213732800-213744200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:213741000-213748200	Enhancers	HepG2	liver
3	chr1:213741400-213744200	Enhancers	Fetal Intestine Small	intestine
4	chr1:213742200-213746000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr1:213742600-213746400	Weak transcription	Pancreas	Pancrea
6	chr1:213743000-213743800	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr1:213743200-213744200	Enhancers	Small Intestine	intestine
8	chr1:213743200-213744400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr1:213743400-213744600	Weak transcription	Fetal Intestine Large	intestine
10	chr1:213743600-213744400	Enhancers	HSMM	muscle
11	chr1:213743600-213746800	Weak transcription	Duodenum Mucosa	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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