Variant report

Variant	rs13376422
Chromosome Location	chr1:77970004-77970005
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12731121	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12732561	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12733666	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12746354	0.85[EUR][1000 genomes]
rs12756133	0.86[EUR][1000 genomes]
rs12760589	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17380852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2454328	0.90[EUR][1000 genomes]
rs2647496	0.84[EUR][1000 genomes]
rs2647497	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35254623	0.90[EUR][1000 genomes]
rs35635429	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35883964	0.90[EUR][1000 genomes]
rs4949803	0.91[EUR][1000 genomes]
rs66538606	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs67045981	0.84[EUR][1000 genomes]
rs72681697	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470719	chr1:77774413-78269207	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv546591	chr1:77774413-78269207	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv871143	chr1:77955577-78031994	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:77956200-77975600	Weak transcription	HSMMtube	muscle
2	chr1:77958200-77974800	Weak transcription	Brain Angular Gyrus	brain
3	chr1:77958400-77974600	Weak transcription	Brain Hippocampus Middle	brain
4	chr1:77958800-77974600	Weak transcription	Brain Anterior Caudate	brain
5	chr1:77958800-77974600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr1:77960000-77974600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr1:77960000-77974600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr1:77962000-77970200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr1:77963800-77974200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr1:77964000-77974600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr1:77964800-77970200	Weak transcription	Primary T cells from cord blood	blood
12	chr1:77965200-77970600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr1:77965200-77970600	Weak transcription	Osteobl	bone
14	chr1:77965400-77971400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr1:77965400-77974600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr1:77965400-77974600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr1:77965800-77974400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr1:77968600-77973000	Weak transcription	NHDF-Ad	bronchial
19	chr1:77968800-77970200	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr1:77969400-77971600	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr1:77969600-77981600	Enhancers	HUVEC	blood vessel
22	chr1:77969800-77971800	Enhancers	Muscle Satellite Cultured Cells	--
23	chr1:77969800-77972400	Enhancers	HSMM	muscle

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