Variant report

Variant	rs13377779
Chromosome Location	chr12:40357601-40357602
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	12:40355227-40369361..12:40703633-40711447	GM12878	blood:

Variant related genes	Relation type
ENSG00000188906	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs12296462	0.85[YRI][hapmap];0.89[AFR][1000 genomes]
rs17489170	1.00[AMR][1000 genomes]
rs17489267	1.00[AMR][1000 genomes]
rs17489295	1.00[AMR][1000 genomes]
rs17489417	1.00[AMR][1000 genomes]
rs17489466	1.00[AMR][1000 genomes]
rs17489522	1.00[AMR][1000 genomes]
rs17489583	1.00[AMR][1000 genomes]
rs17518141	1.00[AMR][1000 genomes]
rs17518148	1.00[AMR][1000 genomes]
rs17518155	1.00[AMR][1000 genomes]
rs17518190	1.00[AMR][1000 genomes]
rs17518322	1.00[AMR][1000 genomes]
rs17518329	1.00[AMR][1000 genomes]
rs17518357	1.00[AMR][1000 genomes]
rs17518392	1.00[AMR][1000 genomes]
rs17518427	1.00[AMR][1000 genomes]
rs28370687	1.00[AMR][1000 genomes]
rs28370691	1.00[AMR][1000 genomes]
rs28370710	1.00[AMR][1000 genomes]
rs28370715	1.00[AMR][1000 genomes]
rs28370716	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28370749	1.00[AMR][1000 genomes]
rs28370751	1.00[AMR][1000 genomes]
rs28370760	1.00[AMR][1000 genomes]
rs28370763	1.00[AMR][1000 genomes]
rs28370769	1.00[AMR][1000 genomes]
rs28370775	1.00[AMR][1000 genomes]
rs28370781	1.00[AMR][1000 genomes]
rs28370782	1.00[AMR][1000 genomes]
rs28370787	1.00[AMR][1000 genomes]
rs28370788	1.00[AMR][1000 genomes]
rs28370789	1.00[AMR][1000 genomes]
rs28370791	1.00[AMR][1000 genomes]
rs28740215	1.00[AMR][1000 genomes]
rs28740216	1.00[AMR][1000 genomes]
rs56193998	1.00[AMR][1000 genomes]
rs57966079	1.00[AMR][1000 genomes]
rs58812092	1.00[AMR][1000 genomes]
rs59404097	1.00[AMR][1000 genomes]
rs59663144	1.00[AMR][1000 genomes]
rs60755503	1.00[AMR][1000 genomes]
rs61339615	1.00[AMR][1000 genomes]
rs74088130	1.00[AMR][1000 genomes]
rs74088192	1.00[AMR][1000 genomes]
rs74089321	1.00[AMR][1000 genomes]
rs74091033	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046428	chr12:40226283-40439843	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv541481	chr12:40226283-40439843	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1052202	chr12:40322607-40406760	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:40338000-40366000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr12:40347800-40369800	Weak transcription	Pancreas	Pancrea
3	chr12:40348200-40361400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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