Variant report

Variant	rs13378886
Chromosome Location	chr13:48054954-48054955
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12184925	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763019	chr13:47348229-48123447	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv3450125	chr13:47919050-48236684	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv455879	chr13:47919611-48190106	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv561588	chr13:47943829-48190106	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48052600-48056200	Enhancers	Monocytes-CD14+_RO01746	blood
2	chr13:48053000-48056000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr13:48053200-48055400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr13:48053400-48056000	Enhancers	HMEC	breast
5	chr13:48053600-48056200	Enhancers	Muscle Satellite Cultured Cells	--
6	chr13:48054200-48058600	Weak transcription	HSMM	muscle
7	chr13:48054400-48055200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr13:48054400-48058600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr13:48054400-48058600	Weak transcription	NH-A	brain
10	chr13:48054400-48058600	Weak transcription	NHDF-Ad	bronchial
11	chr13:48054400-48058600	Weak transcription	Osteobl	bone
12	chr13:48054600-48055000	Weak transcription	HSMMtube	muscle
13	chr13:48054600-48055800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr13:48054600-48058200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr13:48054600-48058200	Weak transcription	NHLF	lung
16	chr13:48054600-48058600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr13:48054800-48056000	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr13:48054800-48058200	Weak transcription	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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