Variant report

Variant	rs13379010
Chromosome Location	chr13:53664728-53664729
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs58256347	1.00[AMR][1000 genomes]
rs9316607	1.00[AMR][1000 genomes]
rs9591497	1.00[AMR][1000 genomes]
rs9596767	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530719	chr13:53173014-53675953	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv3440613	chr13:53307609-53671072	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv832613	chr13:53524319-53687188	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53658600-53666000	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr13:53664200-53664800	Enhancers	Brain Substantia Nigra	brain
3	chr13:53664200-53665000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr13:53664200-53665200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr13:53664200-53665200	Enhancers	Brain Hippocampus Middle	brain
6	chr13:53664200-53665800	Enhancers	Fetal Heart	heart
7	chr13:53664200-53666000	Enhancers	Brain Germinal Matrix	brain
8	chr13:53664400-53664800	Enhancers	Fetal Brain Female	brain
9	chr13:53664600-53665000	Enhancers	Brain Angular Gyrus	brain
10	chr13:53664600-53665000	Enhancers	Fetal Muscle Leg	muscle
11	chr13:53664600-53667000	Weak transcription	Brain Cingulate Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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