Variant report

Variant	rs13379053
Chromosome Location	chr14:64181765-64181766
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64178892..64181954-chr14:64193352..64195310,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000126821	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2275017	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1048645	chr14:64057327-64283872	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv1038825	chr14:64109441-64491720	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv1037824	chr14:64119493-64254025	ZNF genes & repeats Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv1044325	chr14:64142976-64201537	Strong transcription Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	21 gene(s)	inside rSNPs	diseases
6	esv3432445	chr14:64162248-64191918	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64109000-64183800	Weak transcription	Spleen	Spleen
2	chr14:64130800-64192600	Weak transcription	Right Ventricle	heart
3	chr14:64143800-64182200	Weak transcription	Fetal Lung	lung
4	chr14:64143800-64182200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr14:64145200-64182000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr14:64145200-64182200	Weak transcription	Thymus	Thymus
7	chr14:64145200-64184600	Weak transcription	Left Ventricle	heart
8	chr14:64145200-64192600	Weak transcription	HSMM	muscle
9	chr14:64153200-64184000	Weak transcription	Liver	Liver
10	chr14:64153400-64182200	Weak transcription	Adipose Nuclei	Adipose
11	chr14:64153400-64182200	Weak transcription	Dnd41	blood
12	chr14:64154800-64184000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr14:64166200-64183600	Weak transcription	Brain Hippocampus Middle	brain
14	chr14:64169800-64184000	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr14:64172600-64183600	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr14:64173000-64182400	Weak transcription	Fetal Brain Male	brain
17	chr14:64174200-64184400	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr14:64175000-64182200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr14:64176200-64182400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr14:64176200-64182400	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr14:64177400-64182200	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr14:64177600-64183800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr14:64178000-64182000	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr14:64178600-64182200	Weak transcription	Fetal Muscle Leg	muscle
25	chr14:64179200-64182200	Weak transcription	Primary B cells from cord blood	blood
26	chr14:64179200-64182200	Weak transcription	Brain Substantia Nigra	brain
27	chr14:64179200-64183400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr14:64179200-64184000	Weak transcription	Aorta	Aorta
29	chr14:64179200-64184000	Weak transcription	Rectal Smooth Muscle	rectum
30	chr14:64179200-64192400	Weak transcription	Ovary	ovary
31	chr14:64179400-64181800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr14:64179400-64182200	Weak transcription	Primary T cells from cord blood	blood
33	chr14:64179800-64182400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr14:64179800-64182800	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr14:64180000-64192600	Weak transcription	Colon Smooth Muscle	Colon
36	chr14:64180200-64183000	Weak transcription	Fetal Intestine Large	intestine
37	chr14:64180200-64184200	Weak transcription	Brain Angular Gyrus	brain
38	chr14:64180400-64183800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr14:64180600-64182400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr14:64180600-64183000	Strong transcription	Fetal Stomach	stomach
41	chr14:64180600-64184400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr14:64180800-64184000	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr14:64180800-64190600	Weak transcription	Pancreas	Pancrea
44	chr14:64181000-64182000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr14:64181000-64182000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr14:64181000-64182000	Weak transcription	A549	lung
47	chr14:64181000-64182200	Weak transcription	NHLF	lung
48	chr14:64181000-64182600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr14:64181000-64182600	Weak transcription	NH-A	brain
50	chr14:64181000-64183400	Weak transcription	Sigmoid Colon	Sigmoid Colon

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