Variant report

Variant	rs13379592
Chromosome Location	chr15:82278235-82278236
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1112988	0.82[AMR][1000 genomes]
rs11637633	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12324764	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12592956	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13380097	0.93[AMR][1000 genomes]
rs1503065	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1587706	0.85[AMR][1000 genomes]
rs4528531	0.81[AMR][1000 genomes]
rs4778660	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4778961	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6495636	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6495637	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6495638	0.81[AMR][1000 genomes]
rs7163642	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7163710	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7164615	0.83[AMR][1000 genomes]
rs7165730	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7179070	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427964	chr15:81941520-82293593	ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv833067	chr15:82234980-82450485	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:82273800-82287400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:82274200-82287400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr15:82274800-82278400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links