Variant report

Variant	rs13379620
Chromosome Location	chr15:75816110-75816111
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12591309	1.00[LWK][hapmap]
rs12910652	1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531901	chr15:75600108-76019966	Genic enhancers Flanking Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
2	esv3445070	chr15:75623136-76045948	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	nsv530345	chr15:75628556-75951011	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
4	nsv1048028	chr15:75637515-76019967	Strong transcription Genic enhancers Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	161 gene(s)	inside rSNPs	diseases
5	nsv542436	chr15:75637515-76019967	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	161 gene(s)	inside rSNPs	diseases
6	nsv482802	chr15:75686519-75899896	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
7	esv1800424	chr15:75692303-75991451	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	124 gene(s)	inside rSNPs	diseases
8	nsv531902	chr15:75724505-75919237	Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
9	nsv904390	chr15:75795177-75840943	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75777200-75816800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:75797800-75819600	Strong transcription	HUES6 Cell Line	embryonic stem cell
3	chr15:75797800-75819600	Strong transcription	Fetal Stomach	stomach
4	chr15:75797800-75820000	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr15:75798400-75824800	Weak transcription	Stomach Mucosa	stomach
6	chr15:75798400-75825000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr15:75798600-75818800	Weak transcription	Fetal Heart	heart
8	chr15:75798800-75820400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr15:75799400-75818000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr15:75799400-75819400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:75799400-75821800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr15:75800600-75819800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr15:75801400-75820800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr15:75802400-75820000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr15:75802800-75819600	Strong transcription	Liver	Liver
16	chr15:75802800-75820000	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr15:75803200-75817800	Strong transcription	H1 Cell Line	embryonic stem cell
18	chr15:75803200-75819800	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr15:75803200-75828000	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr15:75803400-75819600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr15:75803400-75820200	Strong transcription	Fetal Intestine Small	intestine
22	chr15:75803600-75817800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr15:75804200-75816200	Strong transcription	Placenta	Placenta
24	chr15:75804400-75820000	Strong transcription	Fetal Muscle Leg	muscle
25	chr15:75804600-75816200	Strong transcription	Primary neutrophils fromperipheralblood	blood
26	chr15:75804600-75816400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
27	chr15:75804600-75819600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr15:75804600-75819600	Strong transcription	Lung	lung
29	chr15:75804800-75820000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr15:75805200-75819800	Strong transcription	Primary T cells fromperipheralblood	blood
31	chr15:75806800-75818200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr15:75808400-75819800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr15:75808600-75819600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr15:75808800-75816400	Strong transcription	Rectal Mucosa Donor 29	rectum
35	chr15:75808800-75819800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr15:75809000-75817400	Strong transcription	Left Ventricle	heart
37	chr15:75809000-75819800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
38	chr15:75809200-75816200	Strong transcription	Fetal Brain Female	brain
39	chr15:75809200-75819600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr15:75809200-75819600	Strong transcription	Fetal Muscle Trunk	muscle
41	chr15:75809200-75819800	Strong transcription	HUES48 Cell Line	embryonic stem cell
42	chr15:75809400-75816200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr15:75809400-75816200	Strong transcription	Brain Inferior Temporal Lobe	brain
44	chr15:75809400-75816200	Strong transcription	Sigmoid Colon	Sigmoid Colon
45	chr15:75809400-75816600	Strong transcription	Primary T helper cells PMA-I stimulated	--
46	chr15:75809400-75817800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr15:75809400-75819600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
48	chr15:75809400-75819600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr15:75809400-75819600	Strong transcription	Adipose Nuclei	Adipose
50	chr15:75809400-75819800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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