Variant report

Variant	rs13381594
Chromosome Location	chr18:9963003-9963004
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:9962815..9964648-chr18:10523833..10526357,2	K562	blood:

Variant related genes	Relation type
ENSG00000134265	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10468661	1.00[AMR][1000 genomes]
rs10468662	1.00[AMR][1000 genomes]
rs12326418	1.00[AMR][1000 genomes]
rs12327176	1.00[AMR][1000 genomes]
rs16955716	1.00[AMR][1000 genomes]
rs29085	1.00[YRI][hapmap]
rs8089454	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833586	chr18:9783830-9971693	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv1056479	chr18:9949274-10081418	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:9929400-9965800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr18:9940000-9968200	Weak transcription	Right Ventricle	heart
3	chr18:9951600-9965800	Weak transcription	Pancreas	Pancrea
4	chr18:9952200-9964200	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr18:9953600-9965200	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr18:9953600-9965800	Weak transcription	Lung	lung
7	chr18:9953600-9965800	Weak transcription	Spleen	Spleen
8	chr18:9953600-9966200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr18:9953800-9965600	Weak transcription	Aorta	Aorta
10	chr18:9954000-9966200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr18:9954000-9968000	Weak transcription	Stomach Smooth Muscle	stomach
12	chr18:9954200-9965800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr18:9954200-9966200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr18:9954400-9966000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr18:9954400-9966200	Weak transcription	Left Ventricle	heart
16	chr18:9954600-9966200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr18:9954600-9966200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr18:9954600-9966400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr18:9955200-9965800	Weak transcription	NH-A	brain
20	chr18:9955200-9967000	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr18:9955200-9971600	Weak transcription	Fetal Kidney	kidney
22	chr18:9955400-9965800	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr18:9955800-9965800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr18:9956000-9965800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr18:9956000-9965800	Weak transcription	Duodenum Mucosa	Duodenum
26	chr18:9956000-9965800	Weak transcription	Dnd41	blood
27	chr18:9956000-9966200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr18:9956400-9965800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr18:9956400-9965800	Weak transcription	Fetal Thymus	thymus
30	chr18:9956400-9966000	Weak transcription	Primary B cells from cord blood	blood
31	chr18:9956400-9966200	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr18:9956600-9963800	Weak transcription	A549	lung
33	chr18:9956600-9965600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr18:9956600-9965800	Weak transcription	Primary B cells from peripheral blood	blood
35	chr18:9956600-9966000	Weak transcription	GM12878-XiMat	blood
36	chr18:9956600-9966200	Weak transcription	Primary hematopoietic stem cells	blood
37	chr18:9957000-9966000	Weak transcription	NHLF	lung
38	chr18:9957200-9964000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr18:9957200-9971600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr18:9957800-9965600	Weak transcription	Hela-S3	cervix
41	chr18:9960800-9965600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr18:9960800-9966000	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr18:9961200-9965800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr18:9961200-9965800	Weak transcription	K562	blood
45	chr18:9961200-9966200	Weak transcription	Right Atrium	heart
46	chr18:9961400-9964600	Weak transcription	Fetal Muscle Leg	muscle
47	chr18:9961400-9965600	Weak transcription	HSMM	muscle
48	chr18:9961400-9965800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr18:9961600-9964400	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr18:9961600-9968000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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