Variant report

Variant	rs13382791
Chromosome Location	chr2:111858179-111858180
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1038371	1.00[CHB][hapmap]
rs12991739	1.00[CHB][hapmap]
rs12997152	1.00[CHB][hapmap]
rs13018462	1.00[CHB][hapmap]
rs13024859	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874838	chr2:111376870-112046226	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv874839	chr2:111400934-111868010	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv834331	chr2:111812139-112004678	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:111853800-111859600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr2:111856600-111858400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr2:111856600-111858400	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr2:111856600-111860200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr2:111856800-111860200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr2:111857000-111858800	Enhancers	Dnd41	blood
7	chr2:111857200-111858400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr2:111857600-111858400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr2:111857600-111858800	Enhancers	Thymus	Thymus
10	chr2:111857800-111858400	Enhancers	Fetal Thymus	thymus
11	chr2:111857800-111858600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr2:111857800-111859000	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr2:111857800-111861400	Weak transcription	Right Atrium	heart
14	chr2:111858000-111858400	Flanking Active TSS	GM12878-XiMat	blood
15	chr2:111858000-111858600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
16	chr2:111858000-111858800	Enhancers	Primary B cells from peripheral blood	blood
17	chr2:111858000-111859000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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