Variant report

Variant	rs13382906
Chromosome Location	chr2:134392926-134392927
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10174467	0.89[ASN][1000 genomes]
rs10200864	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10928457	0.82[EUR][1000 genomes]
rs12614645	0.82[EUR][1000 genomes]
rs13402567	0.89[ASN][1000 genomes]
rs13418989	0.86[ASN][1000 genomes]
rs13419711	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1614797	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1622528	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1653790	0.89[ASN][1000 genomes]
rs1653791	0.87[ASN][1000 genomes]
rs1653792	0.89[ASN][1000 genomes]
rs1653794	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1669465	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1669469	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16827604	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1901431	0.87[ASN][1000 genomes]
rs1901451	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1901452	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2167530	0.91[ASN][1000 genomes]
rs4362615	0.86[ASN][1000 genomes]
rs61112423	0.89[ASN][1000 genomes]
rs6430435	0.91[ASN][1000 genomes]
rs6752312	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6758320	0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs73000199	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7569801	0.87[ASN][1000 genomes]
rs7586760	0.87[ASN][1000 genomes]
rs7593735	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7599633	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003624	chr2:134126928-134583203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1006101	chr2:134263288-134973917	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
3	nsv431713	chr2:134316522-134413604	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1013713	chr2:134322236-134644574	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv535931	chr2:134322236-134644574	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv2934	chr2:134368478-134412454	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv998920	chr2:134382097-134424640	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:134389800-134394400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:134391800-134393000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:134392000-134394000	Enhancers	Brain Hippocampus Middle	brain
4	chr2:134392000-134394000	Enhancers	Fetal Heart	heart
5	chr2:134392000-134394200	Enhancers	NHEK	skin
6	chr2:134392000-134396600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr2:134392000-134397800	Weak transcription	Brain Angular Gyrus	brain
8	chr2:134392200-134393000	Enhancers	NH-A	brain
9	chr2:134392200-134393800	Weak transcription	Brain Anterior Caudate	brain
10	chr2:134392200-134394400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr2:134392200-134395600	Enhancers	Brain Substantia Nigra	brain
12	chr2:134392200-134396600	Weak transcription	Brain Cingulate Gyrus	brain
13	chr2:134392200-134397200	Weak transcription	HMEC	breast
14	chr2:134392200-134398400	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr2:134392200-134398800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr2:134392400-134393000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr2:134392800-134399000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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