Variant report

Variant	rs13383113
Chromosome Location	chr2:20605977-20605978
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs34057700	0.89[AMR][1000 genomes]
rs56021041	1.00[AMR][1000 genomes]
rs56175611	0.89[AMR][1000 genomes]
rs57753286	0.89[AMR][1000 genomes]
rs61039314	1.00[AMR][1000 genomes]
rs73214387	0.89[AMR][1000 genomes]
rs73216297	0.89[AMR][1000 genomes]
rs73216299	0.89[AMR][1000 genomes]
rs73218109	0.89[AMR][1000 genomes]
rs73218119	0.89[AMR][1000 genomes]
rs73220046	0.92[AFR][1000 genomes]
rs73231458	0.89[AMR][1000 genomes]
rs73231460	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873716	chr2:20572094-20621404	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv581165	chr2:20581058-20616990	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20601400-20614800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:20604600-20606000	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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