Variant report

Variant	rs13383893
Chromosome Location	chr2:234483673-234483674
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10176427	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10182651	1.00[EUR][1000 genomes]
rs13383300	1.00[EUR][1000 genomes]
rs13385018	0.83[EUR][1000 genomes]
rs13387539	1.00[EUR][1000 genomes]
rs13390446	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13394291	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13394720	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13395023	0.96[EUR][1000 genomes]
rs13401136	0.91[EUR][1000 genomes]
rs13404501	0.83[EUR][1000 genomes]
rs13405703	0.87[EUR][1000 genomes]
rs13408490	0.87[EUR][1000 genomes]
rs13417719	1.00[EUR][1000 genomes]
rs13430633	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13432903	0.91[EUR][1000 genomes]
rs17864662	0.97[ASN][1000 genomes]
rs17868296	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28946875	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4129945	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4132954	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55773422	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529419	chr2:234229606-234670426	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv876013	chr2:234338227-234579915	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv428072	chr2:234393609-234624769	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
4	nsv519876	chr2:234466843-234493048	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234481200-234486200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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