Variant report

Variant	rs13384136
Chromosome Location	chr2:57801443-57801444
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:57800058..57801669-chr2:57807424..57809542,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-VRK2-13	chr2:57801424-57801615	l_1838_chr2:57801423-57806788_testes

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10173972	0.80[ASN][1000 genomes]
rs10180846	0.81[ASN][1000 genomes]
rs10196737	0.86[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs10198189	0.80[ASN][1000 genomes]
rs10200037	0.84[ASN][1000 genomes]
rs10200048	0.86[ASN][1000 genomes]
rs10439484	0.84[ASN][1000 genomes]
rs12328176	0.83[ASN][1000 genomes]
rs12620981	0.86[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs13430995	0.80[ASN][1000 genomes]
rs1358361	0.85[ASN][1000 genomes]
rs1527618	0.84[ASN][1000 genomes]
rs1852563	0.84[ASN][1000 genomes]
rs1918453	0.85[ASN][1000 genomes]
rs2204625	0.85[ASN][1000 genomes]
rs3942515	0.80[ASN][1000 genomes]
rs5023704	0.80[ASN][1000 genomes]
rs6731716	0.85[ASN][1000 genomes]
rs6746760	0.84[ASN][1000 genomes]
rs7564114	0.83[ASN][1000 genomes]
rs7568237	0.84[ASN][1000 genomes]
rs7577676	0.85[ASN][1000 genomes]
rs7594558	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999898	chr2:57193127-57901238	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv535729	chr2:57193127-57901238	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1007118	chr2:57562051-58147588	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv834137	chr2:57683649-57913898	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv874193	chr2:57758608-58066673	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1007295	chr2:57784866-57813785	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	esv2763654	chr2:57784878-57813797	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv535733	chr2:57785257-57810547	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv874194	chr2:57793672-57896756	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13384136	PUS10	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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