Variant report

Variant	rs13384307
Chromosome Location	chr2:173548975-173548976
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10166107	0.87[AFR][1000 genomes]
rs10205076	0.88[AFR][1000 genomes]
rs10205126	0.94[AFR][1000 genomes]
rs11887904	0.86[AFR][1000 genomes]
rs11902830	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12615889	0.80[ASN][1000 genomes]
rs12622834	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13384609	0.95[AFR][1000 genomes]
rs13387816	0.92[AFR][1000 genomes]
rs13422388	0.95[AFR][1000 genomes]
rs13425350	0.95[AFR][1000 genomes]
rs16860794	0.80[ASN][1000 genomes]
rs16860795	0.80[ASN][1000 genomes]
rs16860796	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16860798	0.80[ASN][1000 genomes]
rs16860809	0.82[ASN][1000 genomes]
rs2054163	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2084731	0.80[ASN][1000 genomes]
rs2084732	0.80[ASN][1000 genomes]
rs28670307	0.95[AFR][1000 genomes]
rs4470304	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4972514	0.80[ASN][1000 genomes]
rs4972515	0.80[ASN][1000 genomes]
rs4972516	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4972849	0.80[ASN][1000 genomes]
rs4972850	0.82[ASN][1000 genomes]
rs4972851	0.82[ASN][1000 genomes]
rs59103702	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59648896	0.85[AFR][1000 genomes]
rs61556691	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62169319	0.88[AFR][1000 genomes]
rs6716527	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6733953	0.87[AMR][1000 genomes]
rs733331	0.82[ASN][1000 genomes]
rs7590282	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	esv2760591	chr2:173396905-173719520	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv583665	chr2:173460640-173643087	Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173539600-173554200	Weak transcription	Primary T cells from cord blood	blood
2	chr2:173546200-173549400	Weak transcription	Colon Smooth Muscle	Colon
3	chr2:173548600-173553000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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