Variant report

Variant	rs13384329
Chromosome Location	chr2:190194419-190194420
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10175108	0.88[CHB][hapmap]
rs10198663	0.88[CHB][hapmap]
rs10207812	0.92[ASW][hapmap];0.88[CHB][hapmap]
rs12613903	0.88[CHB][hapmap]
rs13018252	0.88[CHB][hapmap]
rs1520854	0.88[CHB][hapmap]
rs1520858	0.88[CHB][hapmap]
rs1595749	0.88[CHB][hapmap]
rs1851104	0.88[CHB][hapmap]
rs1866605	0.88[CHB][hapmap]
rs1992295	0.88[CHB][hapmap]
rs2351934	0.88[CHB][hapmap]
rs4667284	0.83[CHB][hapmap]
rs59056520	0.94[ASN][1000 genomes]
rs6434343	0.88[CHB][hapmap]
rs6747222	0.88[CHB][hapmap]
rs8179541	0.83[CHB][hapmap]
rs8179732	0.88[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533029	chr2:189812229-190554339	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv875613	chr2:189999011-190324685	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv875614	chr2:190110841-190254758	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190193800-190202800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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