Variant report

Variant	rs13384559
Chromosome Location	chr2:184479350-184479351
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10190626	0.87[ASN][1000 genomes]
rs10497631	0.93[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs11887185	0.86[ASN][1000 genomes]
rs11890491	0.81[EUR][1000 genomes]
rs11895524	0.81[EUR][1000 genomes]
rs1377764	0.86[ASN][1000 genomes]
rs1454053	0.86[ASN][1000 genomes]
rs16824837	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2368423	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34111270	0.81[EUR][1000 genomes]
rs34308312	0.84[EUR][1000 genomes]
rs35056156	0.85[EUR][1000 genomes]
rs4666634	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4666926	0.82[CEU][hapmap];0.83[EUR][1000 genomes]
rs4666931	0.94[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs7574347	0.86[ASN][1000 genomes]
rs7583911	0.92[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs9288095	0.91[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs9784009	0.82[AFR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012672	chr2:184363204-184571778	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv2757843	chr2:184368473-184558908	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2759105	chr2:184368473-184558908	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv428729	chr2:184368473-184558908	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:184475800-184479600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr2:184478200-184479600	Enhancers	Fetal Heart	heart
3	chr2:184478400-184479400	Enhancers	Stomach Smooth Muscle	stomach
4	chr2:184478400-184480000	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr2:184479200-184480400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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