Variant report
| Variant | rs13385135 |
|---|---|
| Chromosome Location | chr2:172773424-172773425 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:172772649..172775409-chr2:172776945..172778838,2 | K562 | blood: | |
| 2 | chr2:172764440..172768356-chr2:172769175..172774540,8 | K562 | blood: | |
| 3 | chr2:172763759..172768235-chr2:172769175..172774540,7 | K562 | blood: | |
| 4 | chr2:172771505..172775106-chr2:172777338..172780165,6 | K562 | blood: | |
| 5 | chr2:172772537..172775890-chr2:172777616..172781028,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000128708 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs1515813 | 1.00[AMR][1000 genomes] |
| rs312923 | 1.00[AMR][1000 genomes] |
| rs4668408 | 1.00[AMR][1000 genomes] |
| rs4668409 | 1.00[AMR][1000 genomes] |
| rs61384579 | 1.00[AMR][1000 genomes] |
| rs6746051 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73976508 | 1.00[AMR][1000 genomes] |
| rs73976515 | 1.00[AMR][1000 genomes] |
| rs73976519 | 1.00[AMR][1000 genomes] |
| rs73976541 | 1.00[AMR][1000 genomes] |
| rs73976543 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv875410 | chr2:172693780-172896587 | Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
| 2 | nsv875411 | chr2:172693780-172942448 | Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 22 gene(s) | inside rSNPs | diseases |
| 3 | nsv536037 | chr2:172745597-172780616 | Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 11 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
